Papers & books chapters

Wilson S.C., Trukhanova I., Dmitrieva L., Dolgova E., Crawford I., Baimukanov M., Baimukanov T., Ismagambetov B., Pazylbekov M., Jussi M., Goodman S.J. (2017) Assessment of impacts and potential mitigation for icebreaking vessels transiting pupping areas of an ice-breeding seal Biological Conservation 214 213-222, 2017, DOI:10.1016/j.biocon.2017.05.028

Marx M., Reiner G., Willems H., Rocha G., Hillerich K., Masello J.F., Mayr S.L., Moussa S., Dunn J.C., Thomas R.C., Goodman S.J., Hamer K.C., Metzger B., Cecere J.G., Spina F., Koschkar S., Calderón L., Romeike T., Quillfeldt P. (2017) High prevalence of Trichomonas gallinae in wild columbids across western and southern Europe Parasites and Vectors 10 1-11, DOI:10.1186/s13071-017-2170-0

Dunn J.C., Stockdale J.E., Bradford E.L., McCubbin A., Morris A.J., Grice P.V., Goodman S.J., Hamer K.C. (2017) High rates of infection by blood parasites during the nestling phase in UK Columbids with notes on ecological associations Parasitology 144622-628, DOI:10.1017/S0031182016002274

Fontaine, M. C.,Thatcher, O., Ray, N., Piry, S.,  Brownlow, A.,  Davison, N. J., Jepson, P., Deaville, R., & Goodman S.J. (2017). Mixing of Porpoise Ecotypes in South Western UK Waters Revealed by Genetic Profiling. Royal Society Open Science. 4: 160992.

Wilson, S. C., Dolgova, E., Trukhanova, I., Dmitrieva, L., Crawford, I., Baimukanov, M., Goodman, S. J. (2017). Breeding behavior and pup development of the Caspian seal, Pusa caspica. Journal of Mammalogy, 98(1):143–153, doi: 10.1093/jmammal/gyw176.

Wilson, S. C., & Goodman, S. J. (2016). Icebreakers and ice-breeding seals. The Circle, 03.2106, 16-19.

Dmitrieva, L. & Goodman S. J. (2016). Caspian seal ecology and conservation. Argos Forum 83, 4-5.

Dmitrieva, L., Jüssi, M., Jüssi, I., Kasymbekov, Y., Verevkin, M., Baimukanov, M., Wilson, S., & Goodman, S. J. (2016) Individual variation in seasonal movements and foraging strategies of a land-locked, ice-breeding pinniped. Marine Ecology Progress Series, 554:241-256. doi: 10.3354/meps11804.

Goodman, S. J. & Dmitrieva, L. (2016). Pusa caspica. The IUCN Red List of Threatened Species 2016: e.T41669A45230700.

Goodman, S. J. (2016). Pusa sibirica. The IUCN Red List of Threatened Species 2016: e.T41676A45231738.

Karamendin, K., Kydyrmanov, A., Seidalina, A., Asanova. S., Sayatov. M., Kasymbekov. E., Khan, E., Daulbayeva, K., Harrison, S. M., Carr, I. M., Goodman, S. J., & Zhumatov, K. (2016). Complete genome sequence of a novel avian paramyxovirus (APMV-13) isolated from a wild bird in Kazakhstan. Genome Announcements, 4(3):e00167-16 doi:10.1128/genomeA.00167-16.

Lee-Cruz, L., Cunningham, A. A., Martínez, P., Cruz, M., Goodman, S. J., & Hamer, K. C. (2016). Prevalence of Haemoproteus sp. in Galápagos blue-footed boobies: effects on health and reproduction. Parasitology Open, 2, e1, 1-10. doi:10.1017/pao.2015.6

Dunn, J. C.,  Stockdale, J. E.,  McCubbin, A.,  Thomas, R. C., Goodman, S. J., Grice, P. V., Morris, A. J., Hamer, K. C., & Symondson, W. O. C. (2016). Non-cultured faecal and gastrointestinal seed samples fail to detect Trichomonad infection in clinically and sub-clinically infected columbid birds. Conservation Genetics Resources, 8, 1-3. doi:10.1007/s12686-016-0518-y

Brock, P. M., Goodman, S. J., Hall, A. J., Cruz, M., & Acevedo-Whitehouse, K. (2015). Context-dependent associations between heterozygosity and immune variation in a wild carnivore. BMC Evolutionary Biology, 15. doi:10.1186/s12862-015-0519-6

Dmitrieva, L., Härkönen, T., Baimukanov, M., Bignert, A., Jüssi, I., Jüssi, M., . . . Goodman, S. J. (2015). Inter-year variation in pup production of Caspian seals (Pusa caspica) 2005-2012 determined from aerial surveys. Endangered Species Research, 28(3), 209-223. doi:10.3354/esr00689

Fournié, G., Goodman, S. J., Cruz, M., Cedeño, V., Vélez, A., Patiño, L., . . . Cunningham, A. (2015). Biogeography of Parasitic Nematode Communities in the Galápagos Giant Tortoise: Implications for Conservation Management. PLoS One, 10(9), e0135684. doi:10.1371/journal.pone.0135684

Stockdale, J. E., Dunn, J. C., Goodman, S. J., Morris, A. J., Sheehan, D. K., Grice, P. V., & Hamer, K. C. (2015). The protozoan parasite Trichomonas gallinae causes adult and nestling mortality in a declining population of European Turtle Doves, Streptopelia turtur. Parasitology, 142(3), 490-498. doi:10.1017/S0031182014001474

Duignan, P. J., Van Bressem, M. F., Baker, J. D., Barbieri, M., Colegrove, K. M., De Guise, S., . . . Wellehan, J. F. (2014). Phocine distemper virus: current knowledge and future directions. Viruses, 6(12), 5093-5134. doi:10.3390/v6125093

Dunn, J. C., Goodman, S. J., Benton, T. G., & Hamer, K. C. (2014). Active blood parasite infection is not limited to the breeding season in a declining farmland bird. Journal of Parasitology, 100(3), 260-266. doi:10.1645/13-256.1

Eastwood, G., Goodman, S. J., Hilgert, N., Cruz, M., Kramer, L. D., & Cunningham, A. A. (2014). Using avian surveillance in Ecuador to assess the imminence of West Nile virus incursion to Galápagos. Ecohealth, 11(1), 53-62. doi:10.1007/s10393-014-0911-5

Wilson, S. C., Eybatov, T. M., Amano, M., Jepson, P. D., & Goodman, S. J. (2014). The role of canine distemper virus and persistent organic pollutants in mortality patterns of Caspian seals (Pusa caspica). PLoS One, 9(7), e99265. doi:10.1371/journal.pone.0099265

Cairns, R., Sallu, S. M., & Goodman, S. (2014). Questioning calls to consensus in conservation: a Q study of conservation discourses on Galápagos. Environmental Conservation, 41(1), 13-26. doi:10.1017/S0376892913000131

Goodman, S. J. (2013). Phocine Distemper Virus. In Mononegaviruses of Veterinary Importance, Volume 1: Pathobiology and Molecular Diagnosis (pp. 264-268). UK: CABI International. Retrieved from

Dunn, J. C., Goodman, S. J., Benton, T. G., & Hamer, K. C. (2013). Avian blood parasite infection during the non-breeding season: an overlooked issue in declining populations? BMC Ecology, 13. doi:10.1186/1472-6785-13-30

Lennon, R. J., Dunn, J. C., Stockdale, J. E., Goodman, S. J., Morris, A. J., & Hamer, K. C. (2013). Trichomonad parasite infection in four species of Columbidae in the UK. Parasitology, 140(11), 1368-1376. doi:10.1017/S0031182013000887

Brock, P. M., Hall, A. J., Goodman, S. J., Cruz, M., & Acevedo-Whitehouse, K. (2013). Immune activity, body condition and human-associated environmental impacts in a wild marine mammal. PLoS One, 8(6), e67132. doi:10.1371/journal.pone.0067132

Whitlock, R., Stewart, G. B., Goodman, S. J., Piertney, S. B., Butlin, R. K., Pullin, A. S., & Burke, T. (2013). A systematic review of phenotypic responses to between-population outbreeding. Environmental Evidence, 2. doi:10.1186/2047-2382-2-13

Dmitrieva, L., Kondakov, A. A., Oleynikov, E., Kydyrmanov, A., Karamendin, K., Kasimbekov, Y., . . . Goodman, S. J. (2013). Assessment of Caspian Seal By-Catch in an Illegal Fishery Using an Interview-Based Approach. PLoS One, 8(6), e67074. doi:10.1371/journal.pone.0067074

Eastwood, G., Goodman, S. J., Cunningham, A. A., & Kramer, L. D. (2013). Aedes taeniorhynchus vectorial capacity informs a pre-emptive assessment of West Nile virus establishment in Galápagos. Scientific Reports, 3, 1519. doi:10.1038/srep01519

Brock, P. M., Hall, A. J., Goodman, S. J., Cruz, M., & Acevedo-Whitehouse, K. (2013). Applying the tools of ecological immunology to conservation: A test case in the Galapagos sea lion. Animal Conservation, 16(1), 19-31. doi:10.1111/j.1469-1795.2012.00567.x

Harkonen, T., Harding, K. C., Wilson, S., Baimukanov, M., Dmitrieva, L., Svensson, C. J., & Goodman, S. J. (2012). Collapse of a Marine Mammal Species Driven by Human Impacts. PLoS One, 7(9), e43130. doi:10.1371/journal.pone.0043130

Bataille, A., Fournié, G., Cruz, M., Cedeño, V., Parker, P. G., Cunningham, A. A., & Goodman, S. J. (2012). Host selection and parasite infection in Aedes taeniorhynchus, endemic disease vector in the Galápagos Islands. Infection Genetics & Evolution, 12(8), 1831-1841. doi:10.1016/j.meegid.2012.07.019

Niedziałkowska, M., Jȩdrzejewska, B., Wójcik, J. M., & Goodman, S. J. (2012). Genetic structure of red deer population in northeastern poland in relation to the history of human interventions. Journal of Wildlife Management, 76(6), 1264-1276. doi:10.1002/jwmg.367

Taype, C. A., Agapito, J. C., Accinelli, R. A., Espinoza, J. R., Godreuil, S., Goodman, S. J., . . . Shaw, M. A. (2012). Genetic diversity, population structure and drug resistance of Mycobacterium tuberculosis in Peru. Infection Genetics & Evolution, 12(3), 577-585. doi:10.1016/j.meegid.2012.02.002

De Luna, C. J., Goodman, S. J., Thatcher, O., Jepson, P. D., Andersen, L., Tolley, K., & Hoelzel, A. R. (2012). Phenotypic and genetic divergence among harbour porpoise populations associated with habitat regions in the North Sea and adjacent seas. Journal of Evolutionary Biology, 25(4), 674-681. doi:10.1111/j.1420-9101.2012.02461.x

Kovacs, K. M., Aguilar, A., Aurioles, D., Burkanov, V., Campagna, C., Gales, N., . . . Trillmich, F. (2012). Global threats to pinnipeds. Marine Mammal Science, 28(2), 414-436. doi:10.1111/j.1748-7692.2011.00479.x

Cruz, L. L., McGill, R. A. R., Goodman, S. J., & Hamer, K. C. (2012). Stable isotope ratios of a tropical marine predator: Confounding effects of nutritional status during growth. Marine Biology, 159(4), 873-880. doi:10.1007/s00227-011-1864-7

Bataille, A., Cunningham, A. A., Cruz, M., Cedeño, V., & Goodman, S. J. (2011). Adaptation, isolation by distance and human-mediated transport determine patterns of gene flow among populations of the disease vector Aedes taeniorhynchus in the Galapagos Islands. Infection Genetics & Evolution, 11(8), 1996-2003. doi:10.1016/j.meegid.2011.09.009

Eastwood, G., Kramer, L. D., Goodman, S. J., & Cunningham, A. A. (2011). West Nile Virus Vector Competency of Culex quinquefasciatus Mosquitoes in the Galapagos Islands. American Journal of Tropical Medicine & Hygiene, 85(3), 426-433. doi:10.4269/ajtmh.2011.10-0739

McCarthy, A. J., Shaw, M. A., Jepson, P. D., Brasseur, S. M., Reijnders, P. J., & Goodman, S. J. (2011). Variation in European harbour seal immune response genes and susceptibility to phocine distemper virus (PDV). Infection Genetics & Evolution, 11(7), 1616-1623. doi:10.1016/j.meegid.2011.06.002

Bataille, A., Cunningham, A. A., Cruz, M., Cedeno, V., & Goodman, S. J. (2010). Seasonal effects and fine-scale population dynamics of Aedes taeniorhynchus, a major disease vector in the Galapagos Islands. Molecular Ecology, 19(20), 4491-4504. doi:10.1111/j.1365-294X.2010.04843.x

Senn, H. V., Barton, N. H., Goodman, S. J., Swanson, G. M., Abernethy, K. A., & Pemberton, J. M. (2010). Investigating temporal changes in hybridization and introgression in a predominantly bimodal hybridizing population of invasive sika (Cervus nippon) and native red deer (C-elaphus) on the Kintyre Peninsula, Scotland. Molecular Ecology, 19(5), 910-924. doi:10.1111/j.1365-294X.2009.04497.x

Senn, H. V., Swanson, G. M., Goodman, S. J., Barton, N. H., & Pemberton, J. M. (2010). Phenotypic correlates of hybridisation between red and sika deer (genus Cervus). J Animal Ecology, 79(2), 414-425. doi:10.1111/j.1365-2656.2009.01633.x

McCarthy, A. J., & Goodman, S. J. (2010). Reassessing conflicting evolutionary histories of the Paramyxoviridae and the origins of respiroviruses with Bayesian multigene phylogenies. Infection Genetics & Evolution, 10(1), 97-107. doi:10.1016/j.meegid.2009.11.002

Bataille, A., Cunningham, A. A., Cedeno, V., Cruz, M., Eastwood, G., Fonseca, D. M., . . . Goodman, S. J. (2009). Evidence for regular ongoing introductions of mosquito disease vectors into the Galapagos Islands. Proceedings of the Royal Society B, 276(1674), 3769-3775. doi:10.1098/rspb.2009.0998

Ruiz-Garcia, M., Martinez-Aguero, M., Alvarez, D., & Goodman, S. (2009). Genetic variability in Neotropical deer genera (Mammalia: Cervidae) according to DNA microsatellite loci. International Journal of Tropical Biology and Conservation, 57(3), 879-904. doi:10.15517/rbt.v57i3.5500

Bataille, A., Horsburgh, G. J., Dawson, D. A., Cunningham, A. A., & Goodman, S. J. (2009). Microsatellite markers characterized in the mosquito Aedes taeniorhynchus (Diptera, Culicidae), a disease vector and major pest on the American coast and the Galapagos Islands. Infection Genetics & Evolution, 9(5), 971-975. doi:10.1016/j.meegid.2009.04.003

Bataille, A., Cunningham, A. A., Cedeno, V., Patino, L., Constantinou, A., Kramer, L. D., & Goodman, S. J. (2009). Natural colonization and adaptation of a mosquito species in Galapagos and its implications for disease threats to endemic wildlife. P NATL ACAD SCI USA, 106(25), 10230-10235. doi:10.1073/pnas.0901308106

Harkonen, T., Jussi, M., Baimukanov, M., Bignert, A., Dmitrieva, L., Kasimbekov, Y., . . . Goodman, S. (2008). Pup production and breeding distribution of the Caspian seal (Phoca caspica) in relation to human impacts. Ambio, 37(5), 356-361. doi:10.1579/07-R-345.1

McCarthy, A. J., Shaw, M. A., & Goodman, S. J. (2007). Pathogen evolution and disease emergence in carnivores. Proceedings of the Royal Society B, 274(1629), 3165-3174. doi:10.1098/rspb.2007.0884

Schaschl, H., Wandeler, P., Suchentrunk, F., Obexer-Ruff, G., & Goodman, S. J. (2006). Selection and recombination drive the evolution of MHC class II DRB diversity in ungulates. Heredity, 97(6), 427-437. doi:10.1038/sj.hdy.6800892

Hall, A. J., Jepson, P. D., Goodman, S. J., & Harkonen, T. (2006). Phocine distemper virus in the North and European Seas – Data and models, nature and nurture. Biological Conservation, 131(2), 221-229. doi:10.1016/j.biocon.2006.04.008

Lopez-Vaamonde, C., Wikstrom, N., Labandeira, C., Godfray, H. C. J., Goodman, S. J., & Cook, J. M. (2006). Fossil-calibrated molecular phylogenies reveal that leaf-mining moths radiated millions of years after their host plants. Journal of Evolutionary Biology, 19(4), 1314-1326. doi:10.1111/j.1420-9101.2005.01070.x

Kilpatrick, A. M., Daszak, P., Goodman, S. J., Rogg, H., Kramer, L. D., Cedeno, V., & Cunningham, A. A. (2006). Predicting pathogen introduction: West Nile virus spread to Galapagos. Conservation Biology, 20(4), 1224-1231. doi:10.1111/j.1523-1739.2006.00423.x

Harkonen, T., Dietz, R., Reijnders, P., Teilmann, J., Harding, K., Hall, A., . . . Thompson, P. (2006). The 1988 and 2002 phocine distemper virus epidemics in European harbour seals. Diseases of Aquatic Organisms, 68(2), 115-130.

Harding, K. C., Hansen, B. J. L., & Goodman, S. J. (2005). Acquired immunity and stochasticity in epidemic intervals impede the evolution of host disease resistance. American Naturalist, 166(6), 722-730. doi:10.1086/497580

Harkonen, T., Harding, K. C., Goodman, S. J., & Johannesson, K. (2005). Colonization history of the baltic harbor seals: Integrating archaeological, behavioral, and genetic data . Marine Mammal Science, 21(4), 695-716. doi:10.1111/j.1748-7692.2005.tb01260.x

Whiteman, N. K., Goodman, S. J., Sinclair, B. J., Walsh, T., Cunningham, A. A., Kramer, L. D., & Parker, P. G. (2005). Establishment of the avian disease vector Culex quinquefasciatus Say, 1823 (Diptera : Culicidae) on the Galapagos Islands, Ecuador . Ibis, 147(4), 844-847. doi:10.1111/j.1474-919X.2005.00468.x

Schaschl, H., Suchentrunk, F., Hammer, S., & Goodman, S. J. (2005). Recombination and the origin of sequence diversity in the DRB MHC class II locus in chamois (Rupicapra spp.). Immunogenetics, 57(1-2), 108-115. doi:10.1007/s00251-005-0784-4

Schaschl, H., Goodman, S. J., & Suchentrunk, F. (2004). Sequence analysis of the MHC class II DRB alleles in Alpine chamois (Rupicapra r. rupicapra). Developmental and Comparative Immunology, 28(3), 265-277. doi:10.1016/j.dci.2003.08.003

Lowden, S., Finlayson, H. A., MacDonald, A. A., Downing, A. C., Goodman, S. J., Leus, K., . . . Archibald, A. L. (2002). Application of Sus scrofa microsatellite markers to wild suiformes. Conservation Genetics, 3, 347-350. doi:10.1023/A:1019989432176

Goodman, S. J. (2002). Genetic Polymorphism. In M. Pagel (Ed.), Encyclopedia of Evolution (pp. 410-413). Oxford University Press, New York.

Goodman, S. J. (2002). Linkage. In M. Pagel (Ed.), Encyclopedia of Evolution (pp. 636-641). Oxford University Press, New York.

Coltman, D. W., Goodman, S. J., & Bowen, W. D. (2002). Molecular ecology of Atlantic harbour seals (Phoca vitulina). In C. J. Pfeiffer (Ed.), Cellular and Molecular Biology of Marine Mammals (pp. 138-151). Krieger Publishing, Melbourne, Florida, USA.

Goodman, S. J., Tamate, H. B., Wilson, R., Nagata, J., Tatsuzawa, S., Swanson, G. M., . . . McCullough, D. R. (2001). Bottlenecks, drift and differentiation: the population structure and demographic history of sika deer (Cervus nippon) in the Japanese archipelago. Molecular Ecology, 10(6), 1357-1370. doi:10.1046/j.1365-294X.2001.01277.x

Goodman, S. J., Barton, N. H., Swanson, G., Abernethey, K., & Pemberton, J. M. (1999). Introgression through rare hybridization: A genetic study of a hybrid zone between red and sika deer (genus Cervus) in Argyll, Scotland. Genetics, 152, 355-371.

Slate, J., Coltman, D. W., Goodman, S. J., MacLean, I., Pemberton, J. M., & Williams, J. L. (1998). Bovine microsatellite loci are highly conserved in red deer (Cervus elaphus), sika deer (Cervus nippon) and Soay sheep (Ovis aries). Animal Genetics, 29, 307-315. doi:10.1046/j.1365-2052.1998.00347.x

Goodman, S. J. (1998). Patterns of extensive genetic differentiation and variation among European harbor seals (Phoca vitulina vitulina) revealed using microsatellite DNA polymorphisms. Molecular Biology and Evolution, 15, 104-118.

Goodman, S. J. (1997). Dinucleotide repeat polymorphisms at seven anonymous microsatellite loci cloned from the European harbour seal (Phoca vitulina vitulina). Animal Genetics, 28, 310-311. doi:10.1111/j.1365-2052.1997.tb00011.x

Thompson, P. M., & Goodman, S. (1997). Direct and indirect estimates of dispersal distances. Trends in Ecology & Evolution, 12(5), 195-196. doi:10.1016/S0169-5347(97)84095-5

Gemmell, N. J., Allen, P., Goodman, S. J., & Reed, J. Z. (1997). Interspecific microsatellite markers for the study of pinniped populations. Molecular Ecology, 6, 661-666. doi:10.1046/j.1365-294X.1997.00235.x

Goodman, S. J. (1997). R-ST Calc: a collection of computer programs for calculating estimates of genetic differentiation from microsatellite data and determining their significance. Molecular Ecology, 6(9), 881-885. doi:10.1111/j.1365-294X.1997.tb00143.x

Stanley, H. F., Casey, S., Carnahan, J. M., Goodman, S., Harwood, J., & Wayne, R. K. (1996). Worldwide patterns of mitochondrial DNA differentiation in the harbor seal (Phoca vitulina). Molecular Biology and Evolution, 13(2), 368-382.