Publications

Papers & books chapters

Fontaine, M. C.,Thatcher, O., Ray, N., Piry, S.,  Brownlow, A.,  Davison, N. J., Jepson, P., Deaville, R., & Goodman S.J. (2017). Mixing of Porpoise Ecotypes in South Western UK Waters Revealed by Genetic Profiling. Royal Society Open Science. 4: 160992. http://dx.doi.org/10.1098/rsos.160992.

Wilson, S. C., Dolgova, E., Trukhanova, I., Dmitrieva, L., Crawford, I., Baimukanov, M., Goodman, S. J. (2017). Breeding behavior and pup development of the Caspian seal, Pusa caspica. Journal of Mammalogy, 98(1):143–153, doi: 10.1093/jmammal/gyw176.

Wilson, S. C., & Goodman, S. J. (2016). Icebreakers and ice-breeding seals. The Circle, 03.2106, 16-19.

Dmitrieva, L. & Goodman S. J. (2016). Caspian seal ecology and conservation. Argos Forum 83, 4-5.

Dmitrieva, L., Jüssi, M., Jüssi, I., Kasymbekov, Y., Verevkin, M., Baimukanov, M., Wilson, S., & Goodman, S. J. (2016) Individual variation in seasonal movements and foraging strategies of a land-locked, ice-breeding pinniped. Marine Ecology Progress Series, 554:241-256. doi: 10.3354/meps11804.

Goodman, S. J. & Dmitrieva, L. (2016). Pusa caspica. The IUCN Red List of Threatened Species 2016: e.T41669A45230700.

Goodman, S. J. (2016). Pusa sibirica. The IUCN Red List of Threatened Species 2016: e.T41676A45231738.

Karamendin, K., Kydyrmanov, A., Seidalina, A., Asanova. S., Sayatov. M., Kasymbekov. E., Khan, E., Daulbayeva, K., Harrison, S. M., Carr, I. M., Goodman, S. J., & Zhumatov, K. (2016). Complete genome sequence of a novel avian paramyxovirus (APMV-13) isolated from a wild bird in Kazakhstan. Genome Announcements, 4(3):e00167-16 doi:10.1128/genomeA.00167-16.

Lee-Cruz, L., Cunningham, A. A., Martínez, P., Cruz, M., Goodman, S. J., & Hamer, K. C. (2016). Prevalence of Haemoproteus sp. in Galápagos blue-footed boobies: effects on health and reproduction. Parasitology Open, 2, e1, 1-10. doi:10.1017/pao.2015.6

Dunn, J. C.,  Stockdale, J. E.,  McCubbin, A.,  Thomas, R. C., Goodman, S. J., Grice, P. V., Morris, A. J., Hamer, K. C., & Symondson, W. O. C. (2016). Non-cultured faecal and gastrointestinal seed samples fail to detect Trichomonad infection in clinically and sub-clinically infected columbid birds. Conservation Genetics Resources, 8, 1-3. doi:10.1007/s12686-016-0518-y

Brock, P. M., Goodman, S. J., Hall, A. J., Cruz, M., & Acevedo-Whitehouse, K. (2015). Context-dependent associations between heterozygosity and immune variation in a wild carnivore. BMC Evolutionary Biology, 15. doi:10.1186/s12862-015-0519-6

Dmitrieva, L., Härkönen, T., Baimukanov, M., Bignert, A., Jüssi, I., Jüssi, M., . . . Goodman, S. J. (2015). Inter-year variation in pup production of Caspian seals (Pusa caspica) 2005-2012 determined from aerial surveys. Endangered Species Research, 28(3), 209-223. doi:10.3354/esr00689

Fournié, G., Goodman, S. J., Cruz, M., Cedeño, V., Vélez, A., Patiño, L., . . . Cunningham, A. (2015). Biogeography of Parasitic Nematode Communities in the Galápagos Giant Tortoise: Implications for Conservation Management. PLoS One, 10(9), e0135684. doi:10.1371/journal.pone.0135684

Stockdale, J. E., Dunn, J. C., Goodman, S. J., Morris, A. J., Sheehan, D. K., Grice, P. V., & Hamer, K. C. (2015). The protozoan parasite Trichomonas gallinae causes adult and nestling mortality in a declining population of European Turtle Doves, Streptopelia turtur. Parasitology, 142(3), 490-498. doi:10.1017/S0031182014001474

Duignan, P. J., Van Bressem, M. F., Baker, J. D., Barbieri, M., Colegrove, K. M., De Guise, S., . . . Wellehan, J. F. (2014). Phocine distemper virus: current knowledge and future directions. Viruses, 6(12), 5093-5134. doi:10.3390/v6125093

Dunn, J. C., Goodman, S. J., Benton, T. G., & Hamer, K. C. (2014). Active blood parasite infection is not limited to the breeding season in a declining farmland bird. Journal of Parasitology, 100(3), 260-266. doi:10.1645/13-256.1

Eastwood, G., Goodman, S. J., Hilgert, N., Cruz, M., Kramer, L. D., & Cunningham, A. A. (2014). Using avian surveillance in Ecuador to assess the imminence of West Nile virus incursion to Galápagos. Ecohealth, 11(1), 53-62. doi:10.1007/s10393-014-0911-5

Wilson, S. C., Eybatov, T. M., Amano, M., Jepson, P. D., & Goodman, S. J. (2014). The role of canine distemper virus and persistent organic pollutants in mortality patterns of Caspian seals (Pusa caspica). PLoS One, 9(7), e99265. doi:10.1371/journal.pone.0099265

Cairns, R., Sallu, S. M., & Goodman, S. (2014). Questioning calls to consensus in conservation: a Q study of conservation discourses on Galápagos. Environmental Conservation, 41(1), 13-26. doi:10.1017/S0376892913000131

Goodman, S. J. (2013). Phocine Distemper Virus. In Mononegaviruses of Veterinary Importance, Volume 1: Pathobiology and Molecular Diagnosis (pp. 264-268). UK: CABI International. Retrieved from http://bookshop.cabi.org/?page=2633&pid=2543&site=191

Dunn, J. C., Goodman, S. J., Benton, T. G., & Hamer, K. C. (2013). Avian blood parasite infection during the non-breeding season: an overlooked issue in declining populations? BMC Ecology, 13. doi:10.1186/1472-6785-13-30

Lennon, R. J., Dunn, J. C., Stockdale, J. E., Goodman, S. J., Morris, A. J., & Hamer, K. C. (2013). Trichomonad parasite infection in four species of Columbidae in the UK. Parasitology, 140(11), 1368-1376. doi:10.1017/S0031182013000887

Brock, P. M., Hall, A. J., Goodman, S. J., Cruz, M., & Acevedo-Whitehouse, K. (2013). Immune activity, body condition and human-associated environmental impacts in a wild marine mammal. PLoS One, 8(6), e67132. doi:10.1371/journal.pone.0067132

Whitlock, R., Stewart, G. B., Goodman, S. J., Piertney, S. B., Butlin, R. K., Pullin, A. S., & Burke, T. (2013). A systematic review of phenotypic responses to between-population outbreeding. Environmental Evidence, 2. doi:10.1186/2047-2382-2-13

Dmitrieva, L., Kondakov, A. A., Oleynikov, E., Kydyrmanov, A., Karamendin, K., Kasimbekov, Y., . . . Goodman, S. J. (2013). Assessment of Caspian Seal By-Catch in an Illegal Fishery Using an Interview-Based Approach. PLoS One, 8(6), e67074. doi:10.1371/journal.pone.0067074

Eastwood, G., Goodman, S. J., Cunningham, A. A., & Kramer, L. D. (2013). Aedes taeniorhynchus vectorial capacity informs a pre-emptive assessment of West Nile virus establishment in Galápagos. Scientific Reports, 3, 1519. doi:10.1038/srep01519

Brock, P. M., Hall, A. J., Goodman, S. J., Cruz, M., & Acevedo-Whitehouse, K. (2013). Applying the tools of ecological immunology to conservation: A test case in the Galapagos sea lion. Animal Conservation, 16(1), 19-31. doi:10.1111/j.1469-1795.2012.00567.x

Harkonen, T., Harding, K. C., Wilson, S., Baimukanov, M., Dmitrieva, L., Svensson, C. J., & Goodman, S. J. (2012). Collapse of a Marine Mammal Species Driven by Human Impacts. PLoS One, 7(9), e43130. doi:10.1371/journal.pone.0043130

Bataille, A., Fournié, G., Cruz, M., Cedeño, V., Parker, P. G., Cunningham, A. A., & Goodman, S. J. (2012). Host selection and parasite infection in Aedes taeniorhynchus, endemic disease vector in the Galápagos Islands. Infection Genetics & Evolution, 12(8), 1831-1841. doi:10.1016/j.meegid.2012.07.019

Niedziałkowska, M., Jȩdrzejewska, B., Wójcik, J. M., & Goodman, S. J. (2012). Genetic structure of red deer population in northeastern poland in relation to the history of human interventions. Journal of Wildlife Management, 76(6), 1264-1276. doi:10.1002/jwmg.367

Taype, C. A., Agapito, J. C., Accinelli, R. A., Espinoza, J. R., Godreuil, S., Goodman, S. J., . . . Shaw, M. A. (2012). Genetic diversity, population structure and drug resistance of Mycobacterium tuberculosis in Peru. Infection Genetics & Evolution, 12(3), 577-585. doi:10.1016/j.meegid.2012.02.002

De Luna, C. J., Goodman, S. J., Thatcher, O., Jepson, P. D., Andersen, L., Tolley, K., & Hoelzel, A. R. (2012). Phenotypic and genetic divergence among harbour porpoise populations associated with habitat regions in the North Sea and adjacent seas. Journal of Evolutionary Biology, 25(4), 674-681. doi:10.1111/j.1420-9101.2012.02461.x

Kovacs, K. M., Aguilar, A., Aurioles, D., Burkanov, V., Campagna, C., Gales, N., . . . Trillmich, F. (2012). Global threats to pinnipeds. Marine Mammal Science, 28(2), 414-436. doi:10.1111/j.1748-7692.2011.00479.x

Cruz, L. L., McGill, R. A. R., Goodman, S. J., & Hamer, K. C. (2012). Stable isotope ratios of a tropical marine predator: Confounding effects of nutritional status during growth. Marine Biology, 159(4), 873-880. doi:10.1007/s00227-011-1864-7

Bataille, A., Cunningham, A. A., Cruz, M., Cedeño, V., & Goodman, S. J. (2011). Adaptation, isolation by distance and human-mediated transport determine patterns of gene flow among populations of the disease vector Aedes taeniorhynchus in the Galapagos Islands. Infection Genetics & Evolution, 11(8), 1996-2003. doi:10.1016/j.meegid.2011.09.009

Eastwood, G., Kramer, L. D., Goodman, S. J., & Cunningham, A. A. (2011). West Nile Virus Vector Competency of Culex quinquefasciatus Mosquitoes in the Galapagos Islands. American Journal of Tropical Medicine & Hygiene, 85(3), 426-433. doi:10.4269/ajtmh.2011.10-0739

McCarthy, A. J., Shaw, M. A., Jepson, P. D., Brasseur, S. M., Reijnders, P. J., & Goodman, S. J. (2011). Variation in European harbour seal immune response genes and susceptibility to phocine distemper virus (PDV). Infection Genetics & Evolution, 11(7), 1616-1623. doi:10.1016/j.meegid.2011.06.002

Bataille, A., Cunningham, A. A., Cruz, M., Cedeno, V., & Goodman, S. J. (2010). Seasonal effects and fine-scale population dynamics of Aedes taeniorhynchus, a major disease vector in the Galapagos Islands. Molecular Ecology, 19(20), 4491-4504. doi:10.1111/j.1365-294X.2010.04843.x

Senn, H. V., Barton, N. H., Goodman, S. J., Swanson, G. M., Abernethy, K. A., & Pemberton, J. M. (2010). Investigating temporal changes in hybridization and introgression in a predominantly bimodal hybridizing population of invasive sika (Cervus nippon) and native red deer (C-elaphus) on the Kintyre Peninsula, Scotland. Molecular Ecology, 19(5), 910-924. doi:10.1111/j.1365-294X.2009.04497.x

Senn, H. V., Swanson, G. M., Goodman, S. J., Barton, N. H., & Pemberton, J. M. (2010). Phenotypic correlates of hybridisation between red and sika deer (genus Cervus). J Animal Ecology, 79(2), 414-425. doi:10.1111/j.1365-2656.2009.01633.x

McCarthy, A. J., & Goodman, S. J. (2010). Reassessing conflicting evolutionary histories of the Paramyxoviridae and the origins of respiroviruses with Bayesian multigene phylogenies. Infection Genetics & Evolution, 10(1), 97-107. doi:10.1016/j.meegid.2009.11.002

Bataille, A., Cunningham, A. A., Cedeno, V., Cruz, M., Eastwood, G., Fonseca, D. M., . . . Goodman, S. J. (2009). Evidence for regular ongoing introductions of mosquito disease vectors into the Galapagos Islands. Proceedings of the Royal Society B, 276(1674), 3769-3775. doi:10.1098/rspb.2009.0998

Ruiz-Garcia, M., Martinez-Aguero, M., Alvarez, D., & Goodman, S. (2009). Genetic variability in Neotropical deer genera (Mammalia: Cervidae) according to DNA microsatellite loci. International Journal of Tropical Biology and Conservation, 57(3), 879-904. doi:10.15517/rbt.v57i3.5500

Bataille, A., Horsburgh, G. J., Dawson, D. A., Cunningham, A. A., & Goodman, S. J. (2009). Microsatellite markers characterized in the mosquito Aedes taeniorhynchus (Diptera, Culicidae), a disease vector and major pest on the American coast and the Galapagos Islands. Infection Genetics & Evolution, 9(5), 971-975. doi:10.1016/j.meegid.2009.04.003

Bataille, A., Cunningham, A. A., Cedeno, V., Patino, L., Constantinou, A., Kramer, L. D., & Goodman, S. J. (2009). Natural colonization and adaptation of a mosquito species in Galapagos and its implications for disease threats to endemic wildlife. P NATL ACAD SCI USA, 106(25), 10230-10235. doi:10.1073/pnas.0901308106

Harkonen, T., Jussi, M., Baimukanov, M., Bignert, A., Dmitrieva, L., Kasimbekov, Y., . . . Goodman, S. (2008). Pup production and breeding distribution of the Caspian seal (Phoca caspica) in relation to human impacts. Ambio, 37(5), 356-361. doi:10.1579/07-R-345.1

McCarthy, A. J., Shaw, M. A., & Goodman, S. J. (2007). Pathogen evolution and disease emergence in carnivores. Proceedings of the Royal Society B, 274(1629), 3165-3174. doi:10.1098/rspb.2007.0884

Schaschl, H., Wandeler, P., Suchentrunk, F., Obexer-Ruff, G., & Goodman, S. J. (2006). Selection and recombination drive the evolution of MHC class II DRB diversity in ungulates. Heredity, 97(6), 427-437. doi:10.1038/sj.hdy.6800892

Hall, A. J., Jepson, P. D., Goodman, S. J., & Harkonen, T. (2006). Phocine distemper virus in the North and European Seas – Data and models, nature and nurture. Biological Conservation, 131(2), 221-229. doi:10.1016/j.biocon.2006.04.008

Lopez-Vaamonde, C., Wikstrom, N., Labandeira, C., Godfray, H. C. J., Goodman, S. J., & Cook, J. M. (2006). Fossil-calibrated molecular phylogenies reveal that leaf-mining moths radiated millions of years after their host plants. Journal of Evolutionary Biology, 19(4), 1314-1326. doi:10.1111/j.1420-9101.2005.01070.x

Kilpatrick, A. M., Daszak, P., Goodman, S. J., Rogg, H., Kramer, L. D., Cedeno, V., & Cunningham, A. A. (2006). Predicting pathogen introduction: West Nile virus spread to Galapagos. Conservation Biology, 20(4), 1224-1231. doi:10.1111/j.1523-1739.2006.00423.x

Harkonen, T., Dietz, R., Reijnders, P., Teilmann, J., Harding, K., Hall, A., . . . Thompson, P. (2006). The 1988 and 2002 phocine distemper virus epidemics in European harbour seals. Diseases of Aquatic Organisms, 68(2), 115-130.

Harding, K. C., Hansen, B. J. L., & Goodman, S. J. (2005). Acquired immunity and stochasticity in epidemic intervals impede the evolution of host disease resistance. American Naturalist, 166(6), 722-730. doi:10.1086/497580

Harkonen, T., Harding, K. C., Goodman, S. J., & Johannesson, K. (2005). Colonization history of the baltic harbor seals: Integrating archaeological, behavioral, and genetic data . Marine Mammal Science, 21(4), 695-716. doi:10.1111/j.1748-7692.2005.tb01260.x

Whiteman, N. K., Goodman, S. J., Sinclair, B. J., Walsh, T., Cunningham, A. A., Kramer, L. D., & Parker, P. G. (2005). Establishment of the avian disease vector Culex quinquefasciatus Say, 1823 (Diptera : Culicidae) on the Galapagos Islands, Ecuador . Ibis, 147(4), 844-847. doi:10.1111/j.1474-919X.2005.00468.x

Schaschl, H., Suchentrunk, F., Hammer, S., & Goodman, S. J. (2005). Recombination and the origin of sequence diversity in the DRB MHC class II locus in chamois (Rupicapra spp.). Immunogenetics, 57(1-2), 108-115. doi:10.1007/s00251-005-0784-4

Schaschl, H., Goodman, S. J., & Suchentrunk, F. (2004). Sequence analysis of the MHC class II DRB alleles in Alpine chamois (Rupicapra r. rupicapra). Developmental and Comparative Immunology, 28(3), 265-277. doi:10.1016/j.dci.2003.08.003

Lowden, S., Finlayson, H. A., MacDonald, A. A., Downing, A. C., Goodman, S. J., Leus, K., . . . Archibald, A. L. (2002). Application of Sus scrofa microsatellite markers to wild suiformes. Conservation Genetics, 3, 347-350. doi:10.1023/A:1019989432176

Goodman, S. J. (2002). Genetic Polymorphism. In M. Pagel (Ed.), Encyclopedia of Evolution (pp. 410-413). Oxford University Press, New York.

Goodman, S. J. (2002). Linkage. In M. Pagel (Ed.), Encyclopedia of Evolution (pp. 636-641). Oxford University Press, New York.

Coltman, D. W., Goodman, S. J., & Bowen, W. D. (2002). Molecular ecology of Atlantic harbour seals (Phoca vitulina). In C. J. Pfeiffer (Ed.), Cellular and Molecular Biology of Marine Mammals (pp. 138-151). Krieger Publishing, Melbourne, Florida, USA.

Goodman, S. J., Tamate, H. B., Wilson, R., Nagata, J., Tatsuzawa, S., Swanson, G. M., . . . McCullough, D. R. (2001). Bottlenecks, drift and differentiation: the population structure and demographic history of sika deer (Cervus nippon) in the Japanese archipelago. Molecular Ecology, 10(6), 1357-1370. doi:10.1046/j.1365-294X.2001.01277.x

Goodman, S. J., Barton, N. H., Swanson, G., Abernethey, K., & Pemberton, J. M. (1999). Introgression through rare hybridization: A genetic study of a hybrid zone between red and sika deer (genus Cervus) in Argyll, Scotland. Genetics, 152, 355-371.

Slate, J., Coltman, D. W., Goodman, S. J., MacLean, I., Pemberton, J. M., & Williams, J. L. (1998). Bovine microsatellite loci are highly conserved in red deer (Cervus elaphus), sika deer (Cervus nippon) and Soay sheep (Ovis aries). Animal Genetics, 29, 307-315. doi:10.1046/j.1365-2052.1998.00347.x

Goodman, S. J. (1998). Patterns of extensive genetic differentiation and variation among European harbor seals (Phoca vitulina vitulina) revealed using microsatellite DNA polymorphisms. Molecular Biology and Evolution, 15, 104-118.

Goodman, S. J. (1997). Dinucleotide repeat polymorphisms at seven anonymous microsatellite loci cloned from the European harbour seal (Phoca vitulina vitulina). Animal Genetics, 28, 310-311. doi:10.1111/j.1365-2052.1997.tb00011.x

Thompson, P. M., & Goodman, S. (1997). Direct and indirect estimates of dispersal distances. Trends in Ecology & Evolution, 12(5), 195-196. doi:10.1016/S0169-5347(97)84095-5

Gemmell, N. J., Allen, P., Goodman, S. J., & Reed, J. Z. (1997). Interspecific microsatellite markers for the study of pinniped populations. Molecular Ecology, 6, 661-666. doi:10.1046/j.1365-294X.1997.00235.x

Goodman, S. J. (1997). R-ST Calc: a collection of computer programs for calculating estimates of genetic differentiation from microsatellite data and determining their significance. Molecular Ecology, 6(9), 881-885. doi:10.1111/j.1365-294X.1997.tb00143.x

Stanley, H. F., Casey, S., Carnahan, J. M., Goodman, S., Harwood, J., & Wayne, R. K. (1996). Worldwide patterns of mitochondrial DNA differentiation in the harbor seal (Phoca vitulina). Molecular Biology and Evolution, 13(2), 368-382.